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gnu: Add r-txdb-hsapiens-ucsc-hg38-knowngene.
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): New variable.
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@ -590,6 +590,35 @@ (define-public r-txdb-hsapiens-ucsc-hg19-knowngene
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track. The database is exposed as a @code{TxDb} object.")
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track. The database is exposed as a @code{TxDb} object.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-txdb-hsapiens-ucsc-hg38-knowngene
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(package
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(name "r-txdb-hsapiens-ucsc-hg38-knowngene")
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(version "3.4.6")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://bioconductor.org/packages/"
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"release/data/annotation/src/contrib"
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"/TxDb.Hsapiens.UCSC.hg38.knownGene_"
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version ".tar.gz"))
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(sha256
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(base32
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"12j7rri9r129v9w1yiqadg952dx462dh092sxif3r5kk8l7bxkn9"))))
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(properties
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`((upstream-name . "TxDb.Hsapiens.UCSC.hg38.knownGene")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-genomicfeatures" ,r-genomicfeatures)))
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(home-page
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"https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg38.knownGene/")
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(synopsis "Annotation package for human genome in TxDb format")
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(description
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"This package provides an annotation database of Homo sapiens genome
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data. It is derived from the UCSC hg38 genome and based on the \"knownGene\"
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track. The database is exposed as a @code{TxDb} object.")
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(license license:artistic2.0)))
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(define-public r-txdb-mmusculus-ucsc-mm9-knowngene
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(define-public r-txdb-mmusculus-ucsc-mm9-knowngene
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(package
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(package
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(name "r-txdb-mmusculus-ucsc-mm9-knowngene")
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(name "r-txdb-mmusculus-ucsc-mm9-knowngene")
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