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gnu: Add r-edger.
* gnu/packages/bioinformatics.scm (r-edger): New variable.
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@ -4437,6 +4437,31 @@ (define-public r-genomeinfodb
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names in their natural, rather than lexicographic, order.")
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(license license:artistic2.0)))
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(define-public r-edger
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(package
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(name "r-edger")
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(version "3.14.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "edgeR" version))
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(sha256
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(base32
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"14vrygy7rz5ngaap4kgkvr3j18y5l6m742n79h68plk6iqgmsskn"))))
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(properties `((upstream-name . "edgeR")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-limma" ,r-limma)))
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(home-page "http://bioinf.wehi.edu.au/edgeR")
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(synopsis "EdgeR does empirical analysis of digital gene expression data")
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(description "This package can do differential expression analysis of
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RNA-seq expression profiles with biological replication. It implements a range
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of statistical methodology based on the negative binomial distributions,
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including empirical Bayes estimation, exact tests, generalized linear models
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and quasi-likelihood tests. It be applied to differential signal analysis of
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other types of genomic data that produce counts, including ChIP-seq, SAGE and
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CAGE.")
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(license license:gpl2+)))
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(define-public r-variantannotation
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(package
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(name "r-variantannotation")
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