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gnu: Add r-battenberg.
* gnu/packages/bioinformatics.scm (r-battenberg): New variable.
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@ -14689,3 +14689,33 @@ (define-public r-ascat
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Number Analysis of Tumors} R package that can be used to infer tumour purity,
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Number Analysis of Tumors} R package that can be used to infer tumour purity,
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ploidy and allele-specific copy number profiles.")
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ploidy and allele-specific copy number profiles.")
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(license license:gpl3)))
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(license license:gpl3)))
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(define-public r-battenberg
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(package
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(name "r-battenberg")
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(version "2.2.9")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/Wedge-lab/battenberg.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0nmcq4c7y5g8h8lxsq9vadz9bj4qgqn118alip520ny6czaxki4h"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-devtools" ,r-devtools)
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("r-readr" ,r-readr)
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("r-doparallel" ,r-doparallel)
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("r-ggplot2" ,r-ggplot2)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-gridextra" ,r-gridextra)
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("r-gtools" ,r-gtools)
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("r-ascat" ,r-ascat)))
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(home-page "https://github.com/Wedge-lab/battenberg")
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(synopsis "Subclonal copy number estimation in R")
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(description "This package contains the Battenberg R package for subclonal
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copy number estimation, as described by
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@url{doi:10.1016/j.cell.2012.04.023,Nik-Zainal et al.}")
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(license license:gpl3)))
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