gnu: Add r-seqarray.

* gnu/packages/bioconductor.scm (r-seqarray): New variable.
This commit is contained in:
Ricardo Wurmus 2023-07-19 15:10:47 +02:00
parent 1f80d41735
commit 72e6324b4a
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@ -9182,6 +9182,36 @@ (define-public r-scry
single-cell RNA-seq.")
(license license:artistic2.0)))
(define-public r-seqarray
(package
(name "r-seqarray")
(version "1.40.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "SeqArray" version))
(sha256
(base32
"1771vk23psjavvi1nf2z8i2xawygdh4amawlijnskci8y9w4x5dm"))))
(properties `((upstream-name . "SeqArray")))
(build-system r-build-system)
(propagated-inputs (list r-biostrings
r-gdsfmt
r-genomeinfodb
r-genomicranges
r-iranges
r-s4vectors))
(native-inputs (list r-knitr))
(home-page "https://github.com/zhengxwen/SeqArray")
(synopsis
"Data management of large-scale whole-genome sequence variant calls")
(description
"This package supports data management of large-scale whole-genome
sequencing variant calls with thousands of individuals: genotypic data (e.g.,
SNVs, indels and structural variation calls) and annotations in SeqArray GDS
files are stored in an array-oriented and compressed manner, with efficient
data access using the R programming language.")
(license license:gpl3)))
(define-public r-seqlogo
(package
(name "r-seqlogo")