From 6eb253beb81637a04cd17fc551b9bdc942c52b74 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 26 Nov 2024 16:19:25 +0100
Subject: [PATCH] gnu: r-regioner: Add missing input.

* gnu/packages/bioconductor.scm (r-regioner)[native-inputs]: Add
r-biocmanager.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: I452297d9b7c776624e54bec376ed14efe4521d55
---
 gnu/packages/bioconductor.scm | 12 +++++++++++-
 1 file changed, 11 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0f0651200d..5914d8e8ca 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11289,6 +11289,16 @@ (define-public r-regioner
          "1226wljfndqs11p61a79b0rm66jzwljzzi8w9lhx9g165jy3xxay"))))
     (properties `((upstream-name . "regioneR")))
     (build-system r-build-system)
+    (arguments
+     (list
+      #:phases
+      '(modify-phases %standard-phases
+         (add-after 'unpack 'delete-bad-tests
+           (lambda _
+             ;; These tests require internet access.
+             (for-each delete-file
+                       '("tests/testthat/test_randomizationFunctions.R"
+                         "tests/testthat/test_toGRanges.R")))))))
     (propagated-inputs
      (list r-biostrings
            r-bsgenome
@@ -11299,7 +11309,7 @@ (define-public r-regioner
            r-rtracklayer
            r-s4vectors))
     (native-inputs
-     (list r-knitr r-testthat))
+     (list r-biocmanager r-knitr r-testthat))
     (home-page "https://bioconductor.org/packages/regioneR/")
     (synopsis "Association analysis of genomic regions")
     (description "This package offers a statistical framework based on