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gnu: python-astropy: Symplify package.

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* gnu/packages/astronomy.scm (python-astropy): Simplify package.
[build-system]: Swap to pyproject-build-system.
[arguments] <#:phases>: Merge 'prepare-test-environment into custom
'check phase and move test arguments to <#:test-arguments>.

Change-Id: I80098c3eb4e9d95ef2c651d5416196165be3f7c0
This commit is contained in:
Sharlatan Hellseher 2024-04-03 22:09:02 +01:00
parent 6008e256f8
commit 6a6378c2eb
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GPG key ID: 76D727BFF62CD2B5
1 changed files with 22 additions and 25 deletions
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gnu/packages/astronomy.scm
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@ -1565,9 +1565,20 @@ (define-public python-astropy
;; see https://github.com/astropy/astropy/pull/14311 ;; see https://github.com/astropy/astropy/pull/14311
(with-directory-excursion "cextern" (with-directory-excursion "cextern"
(for-each delete-file-recursively '("expat" "wcslib"))))))) (for-each delete-file-recursively '("expat" "wcslib")))))))
(build-system python-build-system) (build-system pyproject-build-system)
(arguments (arguments
(list (list
#:test-flags
#~(list "--pyargs" "astropy"
"-n" "auto"
"-k" (string-append
;; Skip tests that need remote data.
"not remote_data"
;; E astropy.samp.errors.SAMPProxyError:
;; <SAMPProxyError 1: 'Timeout expired!'>
" and not test_main"
;; E ModuleNotFoundError: No module named 'wofz'
" and not test_pickle_functional"))
#:phases #:phases
#~(modify-phases %standard-phases #~(modify-phases %standard-phases
(add-after 'unpack 'preparations (add-after 'unpack 'preparations
@ -1587,32 +1598,18 @@ (define-public python-astropy
(add-before 'install 'writable-compiler (add-before 'install 'writable-compiler
(lambda _ (lambda _
(make-file-writable "astropy/_compiler.c"))) (make-file-writable "astropy/_compiler.c")))
(add-before 'check 'prepare-test-environment
(lambda _
;; Some tests require a writable home.
(setenv "HOME" "/tmp")
(make-file-writable "astropy/_compiler.c")
;; Extensions have to be rebuilt before running the tests.
(invoke "python" "setup.py" "build_ext" "--inplace"
"-j" (number->string (parallel-job-count)))))
;; TODO: The swap to pyproject-build-system introduced all tests
;; failed due to pytest could not load conftest.py, find out how
;; to resolve it and migrate completely to pyproject-build-system.
(replace 'check (replace 'check
(lambda* (#:key tests? #:allow-other-keys) (lambda* (#:key tests? test-flags #:allow-other-keys)
(when tests? (when tests?
(invoke "python" "-m" "pytest" "--pyargs" "astropy" (setenv "HOME" "/tmp")
;; with -n : 133.00s (make-file-writable "astropy/_compiler.c")
;; without -n : 326.14s ;; Extensions have to be rebuilt before running the tests.
"-n" (number->string (parallel-job-count)) (invoke "python" "setup.py" "build_ext" "--inplace"
"-k" (string-append "-j" (number->string (parallel-job-count)))
;; Skip tests that need remote data. ;; Step out of the source directory to avoid interference; we
"not remote_data" ;; want to run the installed code with extensions etc.
;; E astropy.samp.errors.SAMPProxyError: (with-directory-excursion "/tmp"
;; <SAMPProxyError 1: 'Timeout expired!'> (apply invoke "pytest" "-v" test-flags))))))))
" and not test_main"
;; E ModuleNotFoundError: No module named 'wofz'
" and not test_pickle_functional"))))))))
(native-inputs (native-inputs
(list pkg-config (list pkg-config
python-colorlog python-colorlog