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gnu: Add r-slingshot.
* gnu/packages/bioconductor.scm (r-slingshot): New variable.
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@ -2600,6 +2600,37 @@ (define-public r-shortread
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ungapped alignment formats.")
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ungapped alignment formats.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-slingshot
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(package
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(name "r-slingshot")
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(version "1.8.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "slingshot" version))
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(sha256
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(base32
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"0sz4frlk7c1g8adyfcgi1mf1xsf9n5zib4bw7j9kl711dbhvkqwl"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-ape" ,r-ape)
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("r-igraph" ,r-igraph)
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("r-matrixstats" ,r-matrixstats)
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("r-princurve" ,r-princurve)
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("r-singlecellexperiment" ,r-singlecellexperiment)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/slingshot")
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(synopsis "Tools for ordering single-cell sequencing")
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(description "This package provides functions for inferring continuous,
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branching lineage structures in low-dimensional data. Slingshot was designed
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to model developmental trajectories in single-cell RNA sequencing data and
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serve as a component in an analysis pipeline after dimensionality reduction
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and clustering. It is flexible enough to handle arbitrarily many branching
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events and allows for the incorporation of prior knowledge through supervised
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graph construction.")
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(license license:artistic2.0)))
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(define-public r-structuralvariantannotation
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(define-public r-structuralvariantannotation
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(package
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(package
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(name "r-structuralvariantannotation")
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(name "r-structuralvariantannotation")
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