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gnu: Add r-slingshot.

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* gnu/packages/bioconductor.scm (r-slingshot): New variable.
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Roel Janssen 2021-05-27 13:31:29 +02:00
parent 12392cff50
commit 5abf8a56ee
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1 changed files with 31 additions and 0 deletions
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gnu/packages/bioconductor.scm
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@ -2600,6 +2600,37 @@ (define-public r-shortread
ungapped alignment formats.")
(license license:artistic2.0)))
(define-public r-slingshot
(package
(name "r-slingshot")
(version "1.8.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "slingshot" version))
(sha256
(base32
"0sz4frlk7c1g8adyfcgi1mf1xsf9n5zib4bw7j9kl711dbhvkqwl"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ape" ,r-ape)
("r-igraph" ,r-igraph)
("r-matrixstats" ,r-matrixstats)
("r-princurve" ,r-princurve)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/slingshot")
(synopsis "Tools for ordering single-cell sequencing")
(description "This package provides functions for inferring continuous,
branching lineage structures in low-dimensional data. Slingshot was designed
to model developmental trajectories in single-cell RNA sequencing data and
serve as a component in an analysis pipeline after dimensionality reduction
and clustering. It is flexible enough to handle arbitrarily many branching
events and allows for the incorporation of prior knowledge through supervised
graph construction.")
(license license:artistic2.0)))
(define-public r-structuralvariantannotation
(package
(name "r-structuralvariantannotation")