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gnu: Add r-anota2seq.
* gnu/packages/bioconductor.scm (r-anota2seq): New variable.
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@ -14197,6 +14197,42 @@ (define-public r-anota
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the data set is suitable for such analysis.")
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(license license:gpl3)))
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(define-public r-anota2seq
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(package
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(name "r-anota2seq")
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(version "1.22.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "anota2seq" version))
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(sha256
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(base32 "0pmk45276bl3qppzxlp4jpc8bsvdpca8nzrdl6c4n9r3xhzfpyq0"))))
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(properties `((upstream-name . "anota2seq")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-deseq2
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r-edger
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r-limma
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r-multtest
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r-qvalue
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r-rcolorbrewer
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r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://bioconductor.org/packages/anota2seq")
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(synopsis "Transcriptome-wide analysis of translational efficiency")
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(description
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"The anota2seq package provides analysis of translational efficiency and
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differential expression analysis for polysome-profiling and ribosome-profiling
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studies (two or more sample classes) quantified by RNA sequencing or
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DNA-microarray. Polysome-profiling and ribosome-profiling typically generate
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data for two RNA sources, translated mRNA and total mRNA. Analysis of
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differential expression is used to estimate changes within each RNA source.
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Analysis of translational efficiency aims to identify changes in translation
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efficiency leading to altered protein levels that are independent of total
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mRNA levels or buffering, a mechanism regulating translational efficiency so
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that protein levels remain constant despite fluctuating total mRNA levels.")
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(license license:gpl3)))
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(define-public r-sigpathway
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(package
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(name "r-sigpathway")
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