gnu: Add r-anota2seq.

* gnu/packages/bioconductor.scm (r-anota2seq): New variable.
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Mădălin Ionel Patrașcu 2023-03-25 00:18:47 +01:00 committed by Ricardo Wurmus
parent d0aaa5aacf
commit 58a3333f58
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@ -14197,6 +14197,42 @@ (define-public r-anota
the data set is suitable for such analysis.")
(license license:gpl3)))
(define-public r-anota2seq
(package
(name "r-anota2seq")
(version "1.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "anota2seq" version))
(sha256
(base32 "0pmk45276bl3qppzxlp4jpc8bsvdpca8nzrdl6c4n9r3xhzfpyq0"))))
(properties `((upstream-name . "anota2seq")))
(build-system r-build-system)
(propagated-inputs
(list r-deseq2
r-edger
r-limma
r-multtest
r-qvalue
r-rcolorbrewer
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/anota2seq")
(synopsis "Transcriptome-wide analysis of translational efficiency")
(description
"The anota2seq package provides analysis of translational efficiency and
differential expression analysis for polysome-profiling and ribosome-profiling
studies (two or more sample classes) quantified by RNA sequencing or
DNA-microarray. Polysome-profiling and ribosome-profiling typically generate
data for two RNA sources, translated mRNA and total mRNA. Analysis of
differential expression is used to estimate changes within each RNA source.
Analysis of translational efficiency aims to identify changes in translation
efficiency leading to altered protein levels that are independent of total
mRNA levels or buffering, a mechanism regulating translational efficiency so
that protein levels remain constant despite fluctuating total mRNA levels.")
(license license:gpl3)))
(define-public r-sigpathway
(package
(name "r-sigpathway")