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gnu: Add r-quantsmooth.
* gnu/packages/bioconductor.scm (r-quantsmooth): New variable.
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@ -8767,6 +8767,33 @@ arrays (expression/SNP/tiling/exon) at probe-level. It currently supports
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Affymetrix (CEL files) and NimbleGen arrays (XYS files).")
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Affymetrix (CEL files) and NimbleGen arrays (XYS files).")
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(license license:lgpl2.0+)))
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(license license:lgpl2.0+)))
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(define-public r-quantsmooth
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(package
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(name "r-quantsmooth")
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(version "1.64.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "quantsmooth" version))
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(sha256
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(base32 "1adwws3brb01d4g6yidipnd8akkiyc3gpdr876hy57qnmcq8xipp"))))
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(properties `((upstream-name . "quantsmooth")))
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(build-system r-build-system)
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(propagated-inputs (list r-quantreg))
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(home-page "https://bioconductor.org/packages/quantsmooth")
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(synopsis "Quantile smoothing and genomic visualization of array data")
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(description
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"This package implements quantile smoothing. It contains a dataset used
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to produce human chromosomal ideograms for plotting purposes and a collection
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of arrays that contains data of chromosome 14 of 3 colorectal tumors. The
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package provides functions for painting chromosomal icons, chromosome or
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chromosomal idiogram and other types of plots. Quantsmooth offers options
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like converting chromosomal ids to their numeric form, retrieving the human
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chromosomal length from NCBI data, retrieving regions of interest in a vector
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of intensities using quantile smoothing, determining cytoband position based
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on the location of the probe, and other useful tools.")
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(license license:gpl2)))
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(define-public r-qvalue
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(define-public r-qvalue
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(package
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(package
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(name "r-qvalue")
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(name "r-qvalue")
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