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gnu: r-bamsignals: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-bamsignals): Move from here...
* gnu/packages/bioconductor.scm (r-bamsignals): ...to here.
This commit is contained in:
zimoun 2021-05-21 22:26:12 +02:00 committed by Ricardo Wurmus
parent 043c309d15
commit 45b6db4fb4
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2 changed files with 30 additions and 30 deletions
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30
gnu/packages/bioconductor.scm
View file

@ -2109,6 +2109,36 @@ (define-public r-aroma-light
classes.")
(license license:gpl2+)))
(define-public r-bamsignals
(package
(name "r-bamsignals")
(version "1.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "bamsignals" version))
(sha256
(base32
"0p3r9z9z5sfkd0b951cgr751k4z0yviyn1jfw9d4fcnyld7g1jxv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rcpp" ,r-rcpp)
("r-rhtslib" ,r-rhtslib)
("r-zlibbioc" ,r-zlibbioc)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/bamsignals")
(synopsis "Extract read count signals from bam files")
(description
"This package efficiently obtains count vectors from indexed bam
files. It counts the number of nucleotide sequence reads in given genomic
ranges and it computes reads profiles and coverage profiles. It also handles
paired-end data.")
(license license:gpl2+)))
(define-public r-biobase
(package
(name "r-biobase")

30
gnu/packages/bioinformatics.scm
View file

@ -8046,36 +8046,6 @@ (define-public r-r4rna
secondary structure and comparative analysis in R.")
(license license:gpl3+)))
(define-public r-bamsignals
(package
(name "r-bamsignals")
(version "1.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "bamsignals" version))
(sha256
(base32
"0p3r9z9z5sfkd0b951cgr751k4z0yviyn1jfw9d4fcnyld7g1jxv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rcpp" ,r-rcpp)
("r-rhtslib" ,r-rhtslib)
("r-zlibbioc" ,r-zlibbioc)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/bamsignals")
(synopsis "Extract read count signals from bam files")
(description
"This package efficiently obtains count vectors from indexed bam
files. It counts the number of nucleotide sequence reads in given genomic
ranges and it computes reads profiles and coverage profiles. It also handles
paired-end data.")
(license license:gpl2+)))
(define-public r-rcas
(package
(name "r-rcas")