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gnu: Add r-bifet.

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* gnu/packages/bioconductor.scm (r-bifet): New variable.
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Ricardo Wurmus 2019-12-17 19:47:19 +01:00
parent de9374b73c
commit 40fe63ad8a
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gnu/packages/bioconductor.scm
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@ -6650,3 +6650,31 @@ (define-public r-bicare
"This is a package for biclustering analysis and exploration of
results.")
(license license:gpl2)))
(define-public r-bifet
(package
(name "r-bifet")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BiFET" version))
(sha256
(base32
"0ck1d6hxd4f40hfz8p2z5xmjbz79yhrf6fisjka2xzk5v9fm4p4k"))))
(properties `((upstream-name . "BiFET")))
(build-system r-build-system)
(propagated-inputs
`(("r-genomicranges" ,r-genomicranges)
("r-poibin" ,r-poibin)))
(home-page "https://bioconductor.org/packages/BiFET")
(synopsis "Bias-free footprint enrichment test")
(description
"BiFET identifies @dfn{transcription factors} (TFs) whose footprints are
over-represented in target regions compared to background regions after
correcting for the bias arising from the imbalance in read counts and GC
contents between the target and background regions. For a given TF k, BiFET
tests the null hypothesis that the target regions have the same probability of
having footprints for the TF k as the background regions while correcting for
the read count and GC content bias.")
(license license:gpl3)))