From 40befd7f1edf513b41b024ff5982f4f17e81b076 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 26 Nov 2024 11:43:14 +0100 Subject: [PATCH] gnu: Add r-rnaseqdata-hnrnpc-bam-chr14. * gnu/packages/bioconductor.scm (r-rnaseqdata-hnrnpc-bam-chr14): New variable. Change-Id: If2f9bf10e3e1396cfd31e3278020d623ce2253e0 --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 8c7bf7e3f0..9acf6c3cde 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2857,6 +2857,31 @@ cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and contro ;; The author(s) mentions only LGPL without any specific version. (license license:lgpl2.1+))) +(define-public r-rnaseqdata-hnrnpc-bam-chr14 + (package + (name "r-rnaseqdata-hnrnpc-bam-chr14") + (version "0.44.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "RNAseqData.HNRNPC.bam.chr14" version + 'experiment)) + (sha256 + (base32 "1yhr798bbv3mc8wnalz4wag1np6kyq6akb0mbpvj47130ifi0wbx")))) + (properties `((upstream-name . "RNAseqData.HNRNPC.bam.chr14"))) + (build-system r-build-system) + (home-page "https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/") + (synopsis + "Aligned reads from RNAseq experiment") + (description + "The package contains 8 BAM files, 1 per sequencing run. Each BAM file +was obtained by aligning the reads (paired-end) to the full hg19 genome with +@code{TopHat2}, and then subsetting to keep only alignments on chr14. See +accession number E-MTAB-1147 in the @code{ArrayExpress} database for details +about the experiment, including links to the published study (by Zarnack et +al., 2012) and to the FASTQ files.") + (license license:lgpl2.0+))) + (define-public r-rtcga-rnaseq (package (name "r-rtcga-rnaseq")