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gnu: Add r-rtcgatoolbox.

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* gnu/packages/bioconductor.scm (r-rtcgatoolbox): New variable.
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Ricardo Wurmus 2023-07-19 15:25:41 +02:00
parent 45bf1a9a6b
commit 3fa6c2b1cb
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1 changed files with 40 additions and 0 deletions
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gnu/packages/bioconductor.scm
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@ -8909,6 +8909,46 @@ (define-public r-restfulr
"This package models a RESTful service as if it were a nested R list.")
(license license:artistic2.0)))
(define-public r-rtcgatoolbox
(package
(name "r-rtcgatoolbox")
(version "2.30.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "RTCGAToolbox" version))
(sha256
(base32
"03p5rgjzc1265q60jkvk92vhcib5wdnv6bz997r70q9c39y03wm5"))))
(properties `((upstream-name . "RTCGAToolbox")))
(build-system r-build-system)
(propagated-inputs (list r-biocgenerics
r-data-table
r-delayedarray
r-genomeinfodb
r-genomicranges
r-httr
r-raggedexperiment
r-rcircos
r-rcurl
r-rjsonio
r-rvest
r-s4vectors
r-stringr
r-summarizedexperiment
r-tcgautils))
(native-inputs (list r-knitr))
(home-page "http://mksamur.github.io/RTCGAToolbox/")
(synopsis "Export TCGA Firehose data")
(description
"Managing data from large scale projects such as The Cancer Genome
Atlas (TCGA) for further analysis is an important and time consuming step for
research projects. Several efforts, such as Firehose project, make TCGA
pre-processed data publicly available via web services and data portals but it
requires managing, downloading and preparing the data for following steps.
This package provides an extensible R based data client for Firehose
pre-processed data.")
(license license:gpl2)))
(define-public r-rtracklayer
(package
(name "r-rtracklayer")