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gnu: Add r-rtcgatoolbox.
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): New variable.
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@ -8909,6 +8909,46 @@ (define-public r-restfulr
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"This package models a RESTful service as if it were a nested R list.")
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"This package models a RESTful service as if it were a nested R list.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-rtcgatoolbox
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(package
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(name "r-rtcgatoolbox")
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(version "2.30.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "RTCGAToolbox" version))
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(sha256
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(base32
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"03p5rgjzc1265q60jkvk92vhcib5wdnv6bz997r70q9c39y03wm5"))))
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(properties `((upstream-name . "RTCGAToolbox")))
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(build-system r-build-system)
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(propagated-inputs (list r-biocgenerics
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r-data-table
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r-delayedarray
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r-genomeinfodb
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r-genomicranges
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r-httr
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r-raggedexperiment
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r-rcircos
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r-rcurl
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r-rjsonio
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r-rvest
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r-s4vectors
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r-stringr
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r-summarizedexperiment
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r-tcgautils))
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(native-inputs (list r-knitr))
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(home-page "http://mksamur.github.io/RTCGAToolbox/")
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(synopsis "Export TCGA Firehose data")
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(description
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"Managing data from large scale projects such as The Cancer Genome
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Atlas (TCGA) for further analysis is an important and time consuming step for
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research projects. Several efforts, such as Firehose project, make TCGA
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pre-processed data publicly available via web services and data portals but it
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requires managing, downloading and preparing the data for following steps.
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This package provides an extensible R based data client for Firehose
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pre-processed data.")
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(license license:gpl2)))
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(define-public r-rtracklayer
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(define-public r-rtracklayer
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(package
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(package
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(name "r-rtracklayer")
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(name "r-rtracklayer")
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