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gnu: python-numpy: Update to 1.26.4 and fix build with gcc-14.
* gnu/packages/patches/python-numpy-gcc-14.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/python-xyz.scm (python-numpy): Update to 1.26.4 and use it. [arguments]: Add phase "relax-gcc-14-strictness". In phase "check", disable more tests. [native-inputs]: Add gcc-14 before gfortran so that gfortran's fenv.h include doesn't win and break the build. Change-Id: I9c8053c66f21521371a85107ef1864a1c0d19ad4
This commit is contained in:
Janneke Nieuwenhuizen
parent
c587daf240
commit
3e1db583fb
3 changed files with 52 additions and 18 deletions
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@ -1980,6 +1980,7 @@ dist_patch_DATA = \
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%D%/packages/patches/python-feedparser-missing-import.patch \
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%D%/packages/patches/python-louvain-fix-test.patch \
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%D%/packages/patches/python-matplotlib-fix-legend-loc-best-test.patch \
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%D%/packages/patches/python-numpy-gcc-14.patch \
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%D%/packages/patches/python-random2-getrandbits-test.patch \
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%D%/packages/patches/python-pillow-use-zlib-1.3.patch \
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%D%/packages/patches/python-pydocstyle-add-support-for-pep701.patch \
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14
gnu/packages/patches/python-numpy-gcc-14.patch
Normal file
14
gnu/packages/patches/python-numpy-gcc-14.patch
Normal file
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@ -0,0 +1,14 @@
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Upstream status: Not presented upstream.
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--- numpy-1.26.4/numpy/core/src/common/half_private.hpp.orig 2024-12-11 22:32:59.883085553 +0100
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+++ numpy-1.26.4/numpy/core/src/common/half_private.hpp 2024-12-11 22:33:05.291112742 +0100
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@@ -1,6 +1,9 @@
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#ifndef NUMPY_CORE_SRC_COMMON_HALF_PRIVATE_HPP
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#define NUMPY_CORE_SRC_COMMON_HALF_PRIVATE_HPP
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+int fetestexcept (int);
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+int feclearexcept (int);
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+int feraiseexcept (int);
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#include "npstd.hpp"
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#include "float_status.hpp"
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@ -8912,7 +8912,7 @@ (define-public python-cython
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writing C extensions for Python as easy as Python itself.")
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(license license:asl2.0)))
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;; Needed for scipy
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;; Needed for scipy and numpy
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(define-public python-cython-0.29.35
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(package
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(inherit python-cython)
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@ -8990,11 +8990,7 @@ (define-public python-cython-3
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(define-public python-numpy
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(package
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(name "python-numpy")
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;; XXX: Any other versions up to 1.26.4 failed to build with error similar
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;; to: 'fenv_t' has not been declared in '::' 58 | using ::fenv_t;
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;; See <https://github.com/numpy/numpy/issues/21075#issuecomment-1047976197>,
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;; <https://github.com/numpy/numpy/issues/24318>.
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(version "1.24.4")
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(version "1.26.4")
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(source
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(origin
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(method url-fetch)
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@ -9003,7 +8999,8 @@ (define-public python-numpy
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version "/numpy-" version ".tar.gz"))
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(sha256
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(base32
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"0qwldmkq5bns561ppkz7psphc4jqfj5j1x4dhq0i8r4qwjjf7xc0"))))
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"0410j6jfz1yzm5s0v0yrc1j0q6ih4322357and7arr0jxnlsn0ia"))
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(patches (search-patches "python-numpy-gcc-14.patch"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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@ -9012,6 +9009,10 @@ (define-public python-numpy
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(ice-9 format))
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'build 'relax-gcc-14-strictness
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(lambda _
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(setenv "CFLAGS"
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"-g -O2 -Wno-error=implicit-function-declaration")))
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(add-before 'build 'parallelize-build
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(lambda _
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(setenv "NPY_NUM_BUILD_JOBS"
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@ -9078,30 +9079,48 @@ (define-public python-numpy
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#$@(if (or (target-x86?) (target-arm32?))
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`(" and not test_identityless_reduction_huge_array"
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" and not (TestKind and test_all)")
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'())
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'())
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;; This test fails when building from aarch64-linux.
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#$@(if (target-arm32?)
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`(" and not test_features")
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'())
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`(" and not test_features")
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'())
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;; These tests seem to fail on machines without
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;; an FPU is still under investigation upstream.
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;; https://github.com/numpy/numpy/issues/20635
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#$@(if (target-riscv64?)
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`(" and not test_float"
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" and not test_fpclass")
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'())))))))))
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;; They also fail with gcc-14
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" and not test_float"
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" and not test_fpclass"
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;; These tests fail with gcc-14
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" and not test_context_locality"
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" and not test_cosh"
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" and not test_default_policy_singleton"
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" and not test_exp_exceptions"
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" and not test_half_fpe"
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" and not test_owner_is_base"
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" and not test_policy_propagation"
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" and not test_set_policy"
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" and not test_sinh"
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" and not test_square_values"
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" and not test_sum"
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" and not test_switch_owner"
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" and not test_thread_locality"))))))))
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(native-inputs
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(list gfortran
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meson-python
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(list meson-python
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pkg-config
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python-cython ;; overwrite Cython from meson-python
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python-cython-0.29.35 ;overwrite Cython from meson-python
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python-hypothesis
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python-mypy
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python-pytest
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python-pytest-xdist
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python-setuptools
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python-typing-extensions
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python-wheel))
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python-wheel
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;; XXX: Avoid to: 'fenv_t' has not been declared in '::' 58 | using ::fenv_t;
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;; See <https://github.com/numpy/numpy/issues/21075#issuecomment-1047976197>,
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;; <https://github.com/numpy/numpy/issues/24318>.
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gcc ;fevn.h c[++] include must precede fortran's
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gfortran))
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(inputs (list bash openblas))
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(home-page "https://numpy.org")
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(synopsis "Fundamental package for scientific computing with Python")
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