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gnu: Add r-tilingarray.
* gnu/packages/bioconductor.scm (r-tilingarray): New variable.
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@ -14989,6 +14989,47 @@ be applied to the analysis of other NGS data obtained from experimental
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procedures that induce nucleotide substitutions (e.g. BisSeq).")
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procedures that induce nucleotide substitutions (e.g. BisSeq).")
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(license license:gpl2)))
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(license license:gpl2)))
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(define-public r-tilingarray
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(package
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(name "r-tilingarray")
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(version "1.76.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "tilingArray" version))
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(sha256
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(base32
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"19bkgblpkcp3w3sdyn82c37gkz1sv3r4d546zpbnh36q2pi3l4zd"))))
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(properties `((upstream-name . "tilingArray")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-affy
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r-biobase
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r-genefilter
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r-pixmap
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r-rcolorbrewer
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r-strucchange
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r-vsn))
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(home-page "https://bioconductor.org/packages/tilingArray")
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(synopsis "Transcript mapping with high-density oligonucleotide tiling arrays")
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(description
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"The package provides functionality that can be useful for the analysis
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of the high-density tiling microarray data (such as from Affymetrix genechips)
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or for measuring the transcript abundance and the architecture. The main
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functionalities of the package are:
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@enumerate
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@item the class segmentation for representing partitionings of a linear series
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of data;
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@item the function segment for fitting piecewise constant models using a
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dynamic programming algorithm that is both fast and exact;
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@item the function @code{confint} for calculating confidence intervals using
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the @code{strucchange} package;
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@item the function @code{plotAlongChrom} for generating pretty plots;
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@item the function @code{normalizeByReference} for probe-sequence dependent
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response adjustment from a (set of) reference hybridizations.
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@end enumerate")
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(license license:artistic2.0)))
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(define-public r-timeseriesexperiment
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(define-public r-timeseriesexperiment
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(package
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(package
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(name "r-timeseriesexperiment")
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(name "r-timeseriesexperiment")
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