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gnu: python-hicmatrix: Work around defect in python-tables.

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* gnu/packages/bioinformatics.scm (python-hicmatrix)[inputs]: Add c-blosc2.
[arguments]: Add phase 'find-blosc2.

Change-Id: I02ea5e36c24b8da330f763aae07b1616e002ed9a
This commit is contained in:
Ricardo Wurmus 2025-01-01 15:29:14 +01:00
parent 4b38f39022
commit 34a279e0da
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GPG key ID: 197A5888235FACAC
1 changed files with 11 additions and 0 deletions
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gnu/packages/bioinformatics.scm
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@ -19351,6 +19351,17 @@ (define-public python-hicmatrix
(base32
"14gq7r9b64ff56l5f8h8zc2i2y3xri646jl0anb74japqxrwvlna"))))
(build-system pyproject-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
;; TODO: this must be fixed in python-tables
(add-before 'check 'find-blosc2
(lambda* (#:key inputs #:allow-other-keys)
(setenv "LD_LIBRARY_PATH"
(dirname (search-input-file
inputs "/lib/libblosc2.so"))))))))
(inputs (list c-blosc2))
(propagated-inputs
(list python-cooler
python-intervaltree