mirror of
https://git.savannah.gnu.org/git/guix.git
synced 2025-01-31 23:06:59 +01:00
gnu: Add r-escape.
* gnu/packages/bioconductor.scm (r-escape): New variable. Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
This commit is contained in:
parent
6688e9f4bd
commit
2ec29a8c11
1 changed files with 40 additions and 0 deletions
|
@ -1127,6 +1127,46 @@ (define-public r-ensdb-mmusculus-v79
|
|||
Ensembl.")
|
||||
(license license:artistic2.0)))
|
||||
|
||||
(define-public r-escape
|
||||
(package
|
||||
(name "r-escape")
|
||||
(version "1.12.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "escape" version))
|
||||
(sha256
|
||||
(base32 "0bmin69ax7l5x3a0k9mv183277a0hl4znx02y79v2ilkgqkdm7fn"))))
|
||||
(properties `((upstream-name . "escape")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs (list r-biocparallel
|
||||
r-broom
|
||||
r-data-table
|
||||
r-dplyr
|
||||
r-ggplot2
|
||||
r-ggridges
|
||||
r-gseabase
|
||||
r-gsva
|
||||
r-matrix
|
||||
r-matrixgenerics
|
||||
r-msigdbr
|
||||
r-patchwork
|
||||
r-reshape2
|
||||
r-rlang
|
||||
r-singlecellexperiment
|
||||
r-stringr
|
||||
r-summarizedexperiment
|
||||
r-ucell))
|
||||
(native-inputs (list r-knitr))
|
||||
(home-page "https://bioconductor.org/packages/escape")
|
||||
(synopsis "Single cell analysis platform for enrichment")
|
||||
(description
|
||||
"R-escape streamlines gene set enrichment analysis for single-cell RNA
|
||||
sequencing. Using raw count information, Seurat objects, or
|
||||
@code{SingleCellExperiment} format, users can perform and visualize GSEA
|
||||
across individual cells.")
|
||||
(license license:gpl2)))
|
||||
|
||||
(define-public r-snplocs-hsapiens-dbsnp144-grch37
|
||||
(package
|
||||
(name "r-snplocs-hsapiens-dbsnp144-grch37")
|
||||
|
|
Loading…
Reference in a new issue