gnu: Add r-escape.

* gnu/packages/bioconductor.scm (r-escape): New variable.

Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
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nafkhamdc 2024-01-05 12:39:46 +00:00 committed by Ricardo Wurmus
parent 6688e9f4bd
commit 2ec29a8c11
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@ -1127,6 +1127,46 @@ (define-public r-ensdb-mmusculus-v79
Ensembl.")
(license license:artistic2.0)))
(define-public r-escape
(package
(name "r-escape")
(version "1.12.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "escape" version))
(sha256
(base32 "0bmin69ax7l5x3a0k9mv183277a0hl4znx02y79v2ilkgqkdm7fn"))))
(properties `((upstream-name . "escape")))
(build-system r-build-system)
(propagated-inputs (list r-biocparallel
r-broom
r-data-table
r-dplyr
r-ggplot2
r-ggridges
r-gseabase
r-gsva
r-matrix
r-matrixgenerics
r-msigdbr
r-patchwork
r-reshape2
r-rlang
r-singlecellexperiment
r-stringr
r-summarizedexperiment
r-ucell))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/escape")
(synopsis "Single cell analysis platform for enrichment")
(description
"R-escape streamlines gene set enrichment analysis for single-cell RNA
sequencing. Using raw count information, Seurat objects, or
@code{SingleCellExperiment} format, users can perform and visualize GSEA
across individual cells.")
(license license:gpl2)))
(define-public r-snplocs-hsapiens-dbsnp144-grch37
(package
(name "r-snplocs-hsapiens-dbsnp144-grch37")