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gnu: python-rdflib: Update to 6.1.1.

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* gnu/packages/rdf.scm (python-rdflib): Update to 6.1.1.
[arguments]: Remove #:tests.  Add #:phases.
[native-inputs]: Change from PYTHON-NOSE to PYTHON-PYTEST.
(python-rdflib-5): New variable.
(python2-rdflib): Inherit from PYTHON-RDFLIB-5.
* gnu/packages/python-xyz.scm (python-prov): Change from PYTHON-RDFLIB to
PYTHON-RDFLIB-5.
* gnu/packages/bioinformatics.scm (cwltool): Likewise.
This commit is contained in:
Marius Bakke 2022-01-18 17:10:28 +01:00
parent ce58adbb3b
commit 2a4c271e61
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GPG key ID: A2A06DF2A33A54FA
3 changed files with 40 additions and 16 deletions
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2
gnu/packages/bioinformatics.scm
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@ -3018,7 +3018,7 @@ and record oriented data modeling and the Semantic Web.")
python-prov
python-pydot
python-psutil
python-rdflib
python-rdflib-5
python-requests
python-ruamel.yaml
python-schema-salad

2
gnu/packages/python-xyz.scm
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@ -19565,7 +19565,7 @@ multitouch applications.")
"1vi2fj31vygfcqrkimdmk52q2ldw08g9fn4v4zlgdfgcjlhqyhxn"))))
(build-system python-build-system)
(propagated-inputs
(list python-dateutil python-lxml python-networkx python-rdflib))
(list python-dateutil python-lxml python-networkx python-rdflib-5))
(native-inputs
(list graphviz python-pydot))
(home-page "https://github.com/trungdong/prov")

52
gnu/packages/rdf.scm
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@ -7,6 +7,7 @@
;;; Copyright © 2020 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2020 pukkamustard <pukkamustard@posteo.net>
;;; Copyright © 2022 Marius Bakke <marius@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -345,27 +346,33 @@ ideal (e.g. in LV2 implementations or embedded applications).")
(define-public python-rdflib
(package
(name "python-rdflib")
(version "4.2.2")
(version "6.1.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "rdflib" version))
(sha256
(base32
"0398c714znnhaa2x7v51b269hk20iz073knq2mvmqp2ma92z27fs"))))
"0m7pyq771vl4zf9xd3pxjbg7x6ac97b3djfbv9qq9fch56ps1gwd"))))
(build-system python-build-system)
(arguments
'(;; FIXME: Three test failures. Should be fixed next release.
#:tests? #f))
;; #:phases
;; (modify-phases %standard-phases
;; (replace 'check
;; (lambda _
;; ;; Run tests from the build directory so python3 only
;; ;; sees the installed 2to3 version.
;; (invoke "nosetests" "--where=./build/src"))))))
'(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'adjust-tests
(lambda _
(for-each delete-file
'(;; This test needs a font that is not shipped.
"test/test_so_69984830.py"
;; These tests need internet access.
"test/jsonld/test_onedotone.py"
"test/test_sparql_service.py"
"test/test_graph.py"))))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "pytest" "-vv" "test/")))))))
(native-inputs
(list python-nose))
(list python-pytest))
(propagated-inputs
(list python-html5lib python-isodate python-pyparsing))
(home-page "https://github.com/RDFLib/rdflib")
@ -376,9 +383,26 @@ powerful language for representing information.")
(license (license:non-copyleft "file://LICENSE"
"See LICENSE in the distribution."))))
(define-public python2-rdflib
(package-with-python2 python-rdflib))
(define-public python-rdflib-5
(package
(inherit python-rdflib)
(version "5.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "rdflib" version))
(sha256
(base32
"0mdi7xh4zcr3ngqwlgqdqf0i5bxghwfddyxdng1zwpiqkpa9s53q"))))
;; XXX: Lazily disable tests because they require a lot of work
;; and this package is only transitional.
(arguments '(#:tests? #f))))
(define-public python2-rdflib
(package-with-python2 python-rdflib-5))
;; Note: This package is only needed for rdflib < 6.0; supersede when
;; the above are removed.
(define-public python-rdflib-jsonld
(package
(name "python-rdflib-jsonld")