From 161518633d692bb98bf46ae617f4c8adc33b9a1a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sun, 1 Dec 2024 08:44:31 +0100
Subject: [PATCH] gnu: r-reportingtools: Add missing inputs.

* gnu/packages/bioconductor.scm (r-reportingtools)[native-inputs]: Add
r-all, r-genefilter, r-hgu95av2-db, r-org-hs-eg-db, r-org-mm-eg-db,
r-org-sc-sgd-db, r-pasilla, and r-shiny.
[properties]: Tell updater to ignore r-gsealm.

Change-Id: I9512bbc7a96c328ee05e15bc898969494dca4be0
---
 gnu/packages/bioconductor.scm | 17 +++++++++++++++--
 1 file changed, 15 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 77f95366d1..ea68181e78 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11946,7 +11946,10 @@ (define-public r-reportingtools
        (snippet
         '(delete-file "inst/extdata/jslib/jquery-1.8.0.min.js"))))
     (properties
-     `((upstream-name . "ReportingTools")))
+     `((upstream-name . "ReportingTools")
+       ;; This is mentioned in microarrayAnalysis.Rnw, but the package doesn't
+       ;; exist and apparently isn't needed after all.
+       (updater-ignored-native-inputs . ("r-gsealm"))))
     (build-system r-build-system)
     (arguments
      (list
@@ -11987,7 +11990,17 @@ (define-public r-reportingtools
            r-r-utils
            r-xml))
     (native-inputs
-     (list esbuild r-rmarkdown r-runit
+     (list esbuild
+           r-all
+           r-genefilter
+           r-hgu95av2-db
+           r-org-hs-eg-db
+           r-org-mm-eg-db
+           r-org-sc-sgd-db
+           r-pasilla
+           r-rmarkdown
+           r-runit
+           r-shiny
            (origin
              (method url-fetch)
              (uri "https://code.jquery.com/jquery-1.8.0.js")