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gnu: Add rust-bio-1.

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* gnu/packages/crates-io.scm (rust-bio-1): New variable.
(rust-bio-0.32, rust-bio-0.33, rust-bio-0.39): Inherit from rust-bio-1.

Change-Id: I72ca75a0b50837a73089f6ec8f5ad7ff779874f6
This commit is contained in:
Efraim Flashner 2023-12-27 09:05:52 +02:00
parent e6efc6b9b8
commit 1435500422
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GPG key ID: 41AAE7DCCA3D8351
1 changed files with 64 additions and 27 deletions
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91
gnu/packages/crates-io.scm
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@ -8210,8 +8210,67 @@ rust-bio and rust-htslib.")
("rust-strum-macros" ,rust-strum-macros-0.21)
("rust-thiserror" ,rust-thiserror-1))))))
(define-public rust-bio-1
(package
(name "rust-bio")
(version "1.5.0")
(source
(origin
(method url-fetch)
(uri (crate-uri "bio" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "1xdx5iih68lraiy6f8n200bgrdfl307dmgdmb984ynmzpb2wzp15"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs (("rust-anyhow" ,rust-anyhow-1)
("rust-approx" ,rust-approx-0.5)
("rust-bio-types" ,rust-bio-types-1)
("rust-bit-set" ,rust-bit-set-0.5)
("rust-bv" ,rust-bv-0.11)
("rust-bytecount" ,rust-bytecount-0.6)
("rust-csv" ,rust-csv-1)
("rust-custom-derive" ,rust-custom-derive-0.1)
("rust-editdistancek" ,rust-editdistancek-1)
("rust-enum-map" ,rust-enum-map-0.6)
("rust-fxhash" ,rust-fxhash-0.2)
("rust-getset" ,rust-getset-0.1)
("rust-itertools" ,rust-itertools-0.11)
("rust-itertools-num" ,rust-itertools-num-0.1)
("rust-lazy-static" ,rust-lazy-static-1)
("rust-multimap" ,rust-multimap-0.8)
("rust-ndarray" ,rust-ndarray-0.15)
("rust-newtype-derive" ,rust-newtype-derive-0.1)
("rust-num-integer" ,rust-num-integer-0.1)
("rust-num-traits" ,rust-num-traits-0.2)
("rust-ordered-float" ,rust-ordered-float-3)
("rust-pest" ,rust-pest-2)
("rust-pest-derive" ,rust-pest-derive-2)
("rust-petgraph" ,rust-petgraph-0.6)
("rust-rand" ,rust-rand-0.8)
("rust-regex" ,rust-regex-1)
("rust-serde" ,rust-serde-1)
("rust-serde-derive" ,rust-serde-derive-1)
("rust-statrs" ,rust-statrs-0.15)
("rust-strum" ,rust-strum-0.24)
("rust-strum-macros" ,rust-strum-macros-0.24)
("rust-thiserror" ,rust-thiserror-1)
("rust-triple-accel" ,rust-triple-accel-0.4)
("rust-vec-map" ,rust-vec-map-0.8))
#:cargo-development-inputs (("rust-proptest" ,rust-proptest-1)
("rust-rand" ,rust-rand-0.8)
("rust-tempfile" ,rust-tempfile-3))))
(home-page "https://rust-bio.github.io")
(synopsis "Bioinformatics library for Rust")
(description
"This package provides a bioinformatics library for Rust. This library
provides implementations of many algorithms and data structures that are
useful for bioinformatics, but also in other fields.")
(license license:expat)))
(define-public rust-bio-0.32
(package
(inherit rust-bio-1)
(name "rust-bio")
(version "0.32.0")
(source
@ -8221,7 +8280,6 @@ rust-bio and rust-htslib.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "1wj6s3hzpx5xhajcnvdabbgpalgghdni7gmlhjl6i9pfh1xiq5pi"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-approx" ,rust-approx-0.3)
@ -8256,17 +8314,11 @@ rust-bio and rust-htslib.")
("rust-triple-accel" ,rust-triple-accel-0.3)
("rust-vec-map" ,rust-vec-map-0.8))
#:cargo-development-inputs
(("rust-proptest" ,rust-proptest-0.10))))
(home-page "https://rust-bio.github.io")
(synopsis "Bioinformatics library for Rust")
(description
"This package provides a bioinformatics library for Rust. This library
provides implementations of many algorithms and data structures that are
useful for bioinformatics, but also in other fields.")
(license license:expat)))
(("rust-proptest" ,rust-proptest-0.10))))))
(define-public rust-bio-0.33
(package
(inherit rust-bio-1)
(name "rust-bio")
(version "0.33.0")
(source
@ -8276,7 +8328,6 @@ useful for bioinformatics, but also in other fields.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "1zaghvazh243x2pg866hjx1zwwpp9qzwkf45iz2fs9af5y661gz5"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-anyhow" ,rust-anyhow-1)
@ -8314,17 +8365,11 @@ useful for bioinformatics, but also in other fields.")
("rust-vec-map" ,rust-vec-map-0.8))
#:cargo-development-inputs
(("rust-proptest" ,rust-proptest-0.10)
("rust-tempfile" ,rust-tempfile-3))))
(home-page "https://rust-bio.github.io")
(synopsis "Bioinformatics library for Rust")
(description
"This package provides a bioinformatics library for Rust. This library
provides implementations of many algorithms and data structures that are
useful for bioinformatics, but also in other fields.")
(license license:expat)))
("rust-tempfile" ,rust-tempfile-3))))))
(define-public rust-bio-0.39
(package
(inherit rust-bio-1)
(name "rust-bio")
(version "0.39.2")
(source (origin
@ -8334,7 +8379,6 @@ useful for bioinformatics, but also in other fields.")
(sha256
(base32
"00k0zv4yyiipzg2arnkrplfi0digwnv89bczfzhyva68yfv8scvb"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-anyhow" ,rust-anyhow-1)
@ -8369,14 +8413,7 @@ useful for bioinformatics, but also in other fields.")
("rust-strum-macros" ,rust-strum-macros-0.21)
("rust-thiserror" ,rust-thiserror-1)
("rust-triple-accel" ,rust-triple-accel-0.4)
("rust-vec-map" ,rust-vec-map-0.8))))
(home-page "https://rust-bio.github.io")
(synopsis "Bioinformatics library for Rust")
(description
"This package provides a bioinformatics library for Rust. This library
provides implementations of many algorithms and data structures that are
useful for bioinformatics, but also in other fields.")
(license license:expat)))
("rust-vec-map" ,rust-vec-map-0.8))))))
(define-public rust-bio-0.41
(package