gnu: Add r-seuratextend.

* gnu/packages/bioinformatics.scm (r-seuratextend): New variable.

Change-Id: I9ce0d90a2f05d4e074459046c380849cf9f63978
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
Navid Afkhami 2024-11-05 16:49:39 +00:00 committed by Ricardo Wurmus
parent f5ca62fcad
commit 0c1a6db809
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@ -20317,6 +20317,52 @@ (define-public r-seurat-utils
require functions from CodeAndRoll and MarkdownReports libraries.")
(license license:gpl3))))
(define-public r-seuratextend
(let ((commit "5382e921f7b365c7b75b20d07cb455e4390fe36f")
(revision "1"))
(package
(name "r-seuratextend")
(version (git-version "1.0.7" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/huayc09/SeuratExtend")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "1rlx20jyfdrymxn8b9dsf9n9jk9rwjjx1wy2f00layvd57g9ch2q"))))
(properties `((upstream-name . "SeuratExtend")))
(build-system r-build-system)
(propagated-inputs (list r-biocmanager
r-dplyr
r-ggplot2
r-ggpubr
r-glue
r-hdf5r
r-magrittr
r-mosaic
r-purrr
r-remotes
r-reshape2
r-reticulate
r-rlist
r-scales
r-seurat
r-seuratextenddata
r-seuratobject
r-tidyr))
(native-inputs (list r-knitr))
(home-page "https://github.com/huayc09/SeuratExtend")
(synopsis "Enhanced toolkit for scRNA-seq analysis")
(description
"This package is designed to improve and simplify the analysis of
scRNA-seq data. It uses the Seurat object for this purpose. It provides an
array of enhanced visualization tools, an integrated functional and pathway
analysis pipeline, seamless integration with popular Python tools, and a suite
of utility functions to aid in data manipulation and presentation.")
(license license:gpl3+))))
(define-public r-seuratextenddata
(let ((commit "e7f17d4bacca436705b06b2cd0c879f83add9271")
(revision "1"))