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gnu: r-genomicfiles: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-genomicfiles): Move from here...
* gnu/packages/bioconductor.scm (r-genomicfiles): ...to here.
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zimoun 2021-05-21 22:25:58 +02:00 committed by Ricardo Wurmus
parent ff65fa90d2
commit 0b5b41c561
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2 changed files with 34 additions and 34 deletions
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34
gnu/packages/bioconductor.scm
View file

@ -2751,6 +2751,40 @@ (define-public r-genomicfeatures
extracting the desired features in a convenient format.")
(license license:artistic2.0)))
(define-public r-genomicfiles
(package
(name "r-genomicfiles")
(version "1.26.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "GenomicFiles" version))
(sha256
(base32
"0awnf0m1pz7cw9wvh9cfxz9k7xm6wnvjm7xbxf139lrhd4nlyqjz"))))
(properties `((upstream-name . "GenomicFiles")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrixgenerics" ,r-matrixgenerics)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/GenomicFiles")
(synopsis "Distributed computing by file or by range")
(description
"This package provides infrastructure for parallel computations
distributed by file or by range. User defined mapper and reducer functions
provide added flexibility for data combination and manipulation.")
(license license:artistic2.0)))
(define-public r-genomicranges
(package
(name "r-genomicranges")

34
gnu/packages/bioinformatics.scm
View file

@ -9168,40 +9168,6 @@ (define-public r-vsn
and specific in detecting differential transcription.")
(license license:artistic2.0)))
(define-public r-genomicfiles
(package
(name "r-genomicfiles")
(version "1.26.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "GenomicFiles" version))
(sha256
(base32
"0awnf0m1pz7cw9wvh9cfxz9k7xm6wnvjm7xbxf139lrhd4nlyqjz"))))
(properties `((upstream-name . "GenomicFiles")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrixgenerics" ,r-matrixgenerics)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/GenomicFiles")
(synopsis "Distributed computing by file or by range")
(description
"This package provides infrastructure for parallel computations
distributed by file or by range. User defined mapper and reducer functions
provide added flexibility for data combination and manipulation.")
(license license:artistic2.0)))
(define-public r-dirichletmultinomial
(package
(name "r-dirichletmultinomial")